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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

The expression landscape of cachexia-inducing factors in human cancers

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Author(s):
Paccielli Freire, Paula [1] ; Javier Fernandez, Geysson [2, 1] ; de Moraes, Diogo [1] ; Santiloni Cury, Sarah [1] ; Dal Pai-Silva, Maeli [1] ; Dos Reis, Patricia Pintor [3, 4] ; Rogatto, Silvia Regina [5, 6] ; Carvalho, Robson Francisco [1]
Total Authors: 8
Affiliation:
[1] Sao Paulo State Univ, Inst Biosci, Dept Struct & Funct Biol, UNESP, Botucatu, SP - Brazil
[2] Univ Antioquia, Fac Med, Medellin - Colombia
[3] Sao Paulo State Univ, Fac Med, Dept Surg & Orthoped, UNESP, Botucatu, SP - Brazil
[4] Sao Paulo State Univ, Fac Med, Expt Res Unity, UNESP, Botucatu, SP - Brazil
[5] Danish Colorectal Canc Ctr South, Vejle - Denmark
[6] Univ Southern Denmark, Univ Hosp, Inst Reg Hlth Res, Dept Clin Genet, Beriderbakken 4, DK-7100 Vejle - Denmark
Total Affiliations: 6
Document type: Journal article
Source: JOURNAL OF CACHEXIA SARCOPENIA AND MUSCLE; MAR 2020.
Web of Science Citations: 0
Abstract

Background Cachexia is a multifactorial syndrome highly associated with specific tumour types, but the causes of variation in cachexia prevalence and severity are unknown. While circulating plasma mediators (soluble cachectic factors) derived from tumours have been implicated with the pathogenesis of the syndrome, these associations were generally based on plasma concentration rather than tissue-specific gene expression levels. Here, we hypothesized that tumour gene expression profiling of cachexia-inducing factors (CIFs) in human cancers with different prevalence of cachexia could reveal potential cancer-specific cachexia mediators and biomarkers of clinical outcome. Methods First, we combined uniformly processed RNA sequencing data from The Cancer Genome Atlas and Genotype-Tissue Expression databases to characterize the expression profile of secretome genes in 12 cancer types (4651 samples) compared with their matched normal tissues (2737 samples). We systematically investigated the transcriptomic data to assess the tumour expression profile of 25 known CIFs and their predictive values for patient survival. We used the Xena Functional Genomics tool to analyse the gene expression of CIFs according to neoplastic cellularity in pancreatic adenocarcinoma, which is known to present the highest prevalence of cachexia. Results A comprehensive characterization of the expression profiling of secreted genes in different human cancers revealed pathways and mediators with a potential role in cachexia within the tumour microenvironment. Cytokine-related and chemokine-related pathways were enriched in tumour types frequently associated with the syndrome. CIFs presented a tumour-specific expression profile, in which the number of upregulated genes was correlated with the cachexia prevalence (r(2): 0.80; P value: 0.002) and weight loss (r(2): 0.81; P value: 0.002). The distinct gene expression profile, according to tumour type, was significantly associated with prognosis (P value <= 1.96 E-06). In pancreatic adenocarcinoma, the upregulated CIF genes were associated with tumours presenting low neoplastic cellularity and high leucocyte fraction and not with tumour grade. Conclusions Our results present a biological dimension of tumour-secreted elements that are potentially useful to explain why specific cancer types are more likely to develop cachexia. The tumour-specific profile of CIFs may help the future development of better targeted therapies to treat cancer types highly associated with the syndrome. (AU)

FAPESP's process: 13/50343-1 - Genomic profiling of messenger RNAs and microRNAs in cancer cachexia
Grantee:Robson Francisco Carvalho
Support type: Regular Research Grants
FAPESP's process: 18/19695-2 - 11th International Conference on Cachexia, Sarcopenia & Muscle Wasting
Grantee:Robson Francisco Carvalho
Support type: Research Grants - Meeting - Abroad
FAPESP's process: 12/13961-6 - Genomic profiling of messenger RNAs and microRNAs in muscle cells treated in vitro with TNF-alpha and IFN-gamma
Grantee:Robson Francisco Carvalho
Support type: Regular Research Grants
FAPESP's process: 14/13941-0 - Multilayer-omics analysis of cancer cachexia: integrative approach to identify biomarkers and drug targets
Grantee:Geysson Javier Fernandez Garcia
Support type: Scholarships in Brazil - Doctorate