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Igor Polikarpov

CV Lattes ResearcherID ORCID


Universidade de São Paulo (USP). Instituto de Física de São Carlos (IFSC)  (Institutional affiliation for the last research proposal)
Birthplace: Rússia

Igor Polikarpov is a Full Professor of the Institute of Physics of Sao Carlos (IFSC), University of São Paulo (USP) and a coordinator of the Center for Renewable Energies and Environment (poloTErRA/USP-São Carlos). His main scientific interests are centered at Structural Biology and Molecular Biophysics and their applications in Bioenergy and Biotechnology. Igor Polikarpov graduated in Physics from the Belorussian State University (1983), did his PhD at the same University (1989), and post-docs at the Latvian Academy of Science (1989-1991), Max-Planck Gesselschaft (1991-1993) and the University of Edinburgh (1993-1995). Published over 300 scientific papers, which were cited more than 11,800 times, resulting in h-factor of 57 (Google Scholar). Igor Polikarpov coordinated joint scientific projects with European Union (FP7), UK (FAPESP-RCUK), Argentina and Uruguay (CBAB), India (CNPq-DBT) and is coordinating collaborative project with Belgium. He also developed scientific collaborations with biotechnological and pharmaceutical companies and was responsible for construction and operation of large-scale scientific installations (protein crystallography beamlines MX-1 & MX-2 at the Brazilian National Synchrotron Laboratory/LNLS, Campinas, Brazil). He was an Honorary Professor of the University of Bath and an Honorary Visiting Professor at the Department of Biology of the University of York. Igor Polikarpov was one of the proponents of the Integrated PhD Program in Bioenergy (joint graduate course of three São Paulo State Universities: USP, UNESP and UNICAMP). Igor Polikarpov is a Commander of the Brazilian National Order of Scientific Merit and a Member of São Paulo State Academy of Sciences. (Source: Lattes Curriculum)

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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (173)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

MARTINEZ, LEANDRO; SOUZA, PAULO C. T.; GARCIA, WANIUS; BATISTA, FERNANDA A. H.; PORTUGAL, RODRIGO V.; NASCIMENTO, ALESSANDRO S.; NAKAHIRA, MARCEL; LIMA, LUIS M. T. R.; POLIKARPOV, IGOR; SKAF, MUNIR S.. On the Denaturation Mechanisms of the Ligand Binding Domain of Thyroid Hormone Receptors. Journal of Physical Chemistry B, v. 114, n. 3, p. 1529-1540, . (06/00182-8, 06/06831-8)

NASCIMENTO, ALESSANDRO S.. Structural requirement for PPAR gamma binding revealed by a meta analysis of holo-crystal structures. Biochimie, v. 92, n. 5, p. 499-506, .

DOS REIS, CAIO VINICIUS; BERNARDES, AMANDA; POLIKARPOV, IGOR. Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 5, p. 588-591, . (08/56255-9, 09/52840-7)

ROJAS, A. L.; NAGEM, R. A. P.; NEUSTROEV, K. N.; ARAND, M.; ADAMSKA, M.; ENEYSKAYA, E. V.; KULMINSKAYA, A. A.; GARRATT, R. C.; GOLUBEV, A. M.; POLIKARPOV, I.. Crystal structures of beta-galactosidase from Penicillium sp. and its complex with galactose. Journal of Molecular Biology, v. 343, n. 5, p. 1281-1292, . (99/03387-4)

TRIVELLA, DANIELA B. B.; DOS REIS, CAIO V.; LIMA, LUIS MAURICIO T. R.; FOGUEL, DEBORA; POLIKARPOV, IGOR. Flavonoid interactions with human transthyretin: Combined structural and thermodynamic analysis. Journal of Structural Biology, v. 180, n. 1, p. 143-153, . (09/54035-4, 06/01708-3)

RAZZERA, GUILHERME; VERNAL, JAVIER; PORTUGAL, RODRIGO V.; CALGARO, MARCOS R.; FERNANDEZ, PABLO; ZAKIN, MARIO M.; POLIKARPOV, IGOR; TERENZI, HERNÁN. Expression, purification, and initial structural characterization of rat orphan nuclear receptor NOR-1 LBD domain. Protein Expression and Purification, v. 37, n. 2, p. 443-449, . (99/03387-4)

AMBROSIO, ANDRE L. B.; DIAS, SANDRA M. G.; POLIKARPOV, IGOR; ZURIER, ROBERT B.; BURSTEIN, SUMNER H.; GARRATT, RICHARD C.. Ajulemic acid, a synthetic nonpsychoactive cannabinoid acid, bound to the ligand binding domain of the human peroxisome proliferator-activated receptor gamma. Journal of Biological Chemistry, v. 282, n. 25, p. 18625-18633, . (06/00182-8, 98/14138-2, 99/03387-4)

CALGARO, MARCOS R.; OLIVEIRA NETO, MARIO DE; FIGUEIRA, ANA CAROLINA M.; SANTOS, MARIA A. M.; PORTUGAL, RODRIGO V.; GUZZI, CAROLINA A.; SAIDEMBERG, DANIEL M.; BLEICHER, LUCAS; VERNAL, JAVIER; FERNANDEZ, PABLO; et al. Orphan nuclear receptor NGFI-B forms dimers with nonclassical interface. Protein Science, v. 16, n. 8, p. 1762-1772, .

DE SOUZA, AMANDA P.; LEITE, DEBORA C. C.; PATTATHIL, SIVAKUMAR; HAHN, MICHAEL G.; BUCKERIDGE, MARCOS S.. Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production. BioEnergy Research, v. 6, n. 2, p. 564-579, . (09/52840-7, 08/57908-6)

CUNHA LIMA, SUZANA T.; NGUYEN, NGOC-HA; TOGASHI, MARIE; APRILETTI, JAMES W.; NGUYEN, PHUONG; POLIKARPOV, IGOR; SCANLAN, THOMAS S.; BAXTER, JOHN D.; WEBB, PAUL. Differential effects of TR ligands on hormone dissociation rates: Evidence for multiple ligand entry/exit pathways. JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY, v. 117, n. 4-5, p. 125-131, . (06/00182-8)

COLUSSI, FRANCIELI; GARCIA, WANIUS; ROSSETO, FLAVIO RODOLFO; SOARES DE MELLO, BRUNO LUAN; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 41, n. 1, p. 89-98, . (10/08370-3, 10/16542-9, 09/54035-4)

TEXTOR, LARISSA C.; SANTOS, JADEMILSON C.; HIDALGO CUADRADO, NAZARET; ROIG, MANUEL G.; ZHADAN, GALINA G.; SHNYROV, VALERY L.; POLIKARPOV, IGOR. Purification, crystallization and preliminary crystallographic analysis of peroxidase from the palm tree Chamaerops excelsa. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 67, n. 12, p. 1641-1644, . (09/14333-6, 09/52840-7)

SANTOS, MARIA A. M.; SANTOS, SILVIA M.; MATOZO, HUITA C.; PORTUGAL, RODRIGO V.; IULIANO, RODOLFO; FUSCO, ALFREDO; POLIKARPOV, IGOR. Expression, purification, and characterization of rat protein tyrosine phosphatase eta catalytic domain. Protein Expression and Purification, v. 41, n. 1, p. 113-120, . (99/03387-4)

LIMA, MARISA A.; LAVORENTE, GABRIELA B.; DA SILVA, HANA K. P.; BRAGATTO, JULIANO; REZENDE, CAMILA A.; BERNARDINELLI, OIGRES D.; DEAZEVEDO, EDUARDO R.; GOMEZ, LEONARDO D.; MCQUEEN-MASON, SIMON J.; LABATE, CARLOS A.; et al. Effects of pretreatment on morphology, chemical composition and enzymatic digestibility of eucalyptus bark: a potentially valuable source of fermentable sugars for biofuel production - part 1. BIOTECHNOLOGY FOR BIOFUELS, v. 6, . (10/08370-3, 10/52362-5, 10/11135-6, 08/56255-9, 09/18354-8)

SEGATO, FERNANDO; BERTO, GABRIELA L.; DE ARAUJO, EVANDRO ARES; MUNIZ, JOAO RENATO; POLIKARPOV, IGOR. Expression, purification, crystallization and preliminary X-ray diffraction analysis of Aspergillus terreus endo-beta-1,4-glucanase from glycoside hydrolase family 12. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 70, n. 2, p. 267-270, . (09/52840-7, 08/05637-9, 10/16947-9)

PELLEGRINI, VANESSA O. A.; SERPA, VIVIANE ISABEL; GODOY, ANDRE S.; CAMILO, CESAR M.; BERNARDES, AMANDA; REZENDE, CAMILA A.; PEREIRA JUNIOR, NEI; CAIRO, JOAO PAULO L. FRANCO; SQUINA, FABIO M.; POLIKARPOV, IGOR. Recombinant Trichoderma harzianum endoglucanase I (Cel7B) is a highly acidic and promiscuous carbohydrate-active enzyme. Applied Microbiology and Biotechnology, v. 99, n. 22, p. 9591-9604, . (11/05712-3, 08/56255-9, 11/20977-3, 09/52840-7, 10/18773-8, 09/05328-9)

MIOTTO, LIS S.; DOS REIS, CAIO V.; NETO, MARIO DE OLIVEIRA; POLIKARPOV, IGOR. SAXS Studies of the Endoglucanase Cel12A from Gloeophyllum trabeum Show Its Monomeric Structure and Reveal the Influence of Temperature on the Structural Stability of the Enzyme. MATERIALS, v. 7, n. 7, p. 5202-5211, . (09/08233-9)

KRAUCHENCO‚ S.; NAGEM‚ R.A.P.; DA SILVA‚ J.A.; MARANGONI‚ S.; POLIKARPOV‚ I.. Three-dimensional structure of an unusual Kunitz (STI) type trypsin inhibitor from Copaifera langsdorffii. Biochimie, v. 86, n. 3, p. 167-172, . (99/03387-4)

MATOZO‚ H.C.; SANTOS‚ M.A.M.; DE OLIVEIRA NETO‚ M.; BLEICHER‚ L.; LIMA‚ L.M.T.R.; IULIANO‚ R.; FUSCO‚ A.; POLIKARPOV‚ I.. Low-Resolution Structure and Fluorescence Anisotropy Analysis of Protein Tyrosine Phosphatase [eta] Catalytic Domain. BIOPHYSICAL JOURNAL, v. 92, n. 12, p. 4424-4432, . (99/03387-4, 06/00182-8)

BLEICHER‚ L.; APARICIO‚ R.; NUNES‚ F.; MARTINEZ‚ L.; DIAS‚ S.G.; FIGUEIRA‚ A.; SANTOS‚ M.; VENTURELLI‚ W.; DA SILVA‚ R.; DONATE‚ P.; et al. Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms. BMC STRUCTURAL BIOLOGY, v. 8, n. 1, p. 8, . (06/00182-8)

NASCIMENTO‚ A.; CATALANO-DUPUY‚ D.; BERNARDES‚ A.; NETO‚ M.; SANTOS‚ M.; CECCARELLI‚ E.; POLIKARPOV‚ I.. Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+. BMC STRUCTURAL BIOLOGY, v. 7, n. 1, p. 69, . (06/00182-8)

FLORINDO, RENATA N.; SOUZA, VALQUIRIA P.; MANZINE, LIVIA R.; CAMILO, CESAR M.; MARANA, SANDRO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. Structural and biochemical characterization of a GH3 beta-glucosidase from the probiotic bacteria Bifidobacterium adolescentis. Biochimie, v. 148, p. 107-115, . (14/19439-5, 08/56255-9, 14/06565-2)

CASTILLO PEDRAZA, MIDIAN C.; NOVAIS, TATIANA F.; FAUSTOFERRI, ROBERTA C.; QUIVEY, JR., ROBERT G.; TEREKHOV, ANTON; HAMAKER, BRUCE R.; KLEIN, MARLISE I.. Extracellular DNA and lipoteichoic acids interact with exopolysaccharides in the extracellular matrix of Streptococcus mutans biofilms. BIOFOULING, v. 33, n. 9, p. 722-740, . (14/05423-0, 14/21355-4, 09/54035-4)

MELLO, BRUNO L.; ALESSI, ANNA M.; RIANO-PACHON, DIEGO M.; DEAZEVEDO, EDUARDO R.; GUIMARAES, FRANCISCO E. G.; ESPIRITO SANTO, MELISSA C.; MCQUEEN-MASON, SIMON; BRUCE, NEIL C.; POLIKARPOV, IGOR. Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-beta-xylanase activity. BIOTECHNOLOGY FOR BIOFUELS, v. 10, . (15/13684-0, 11/21608-1, 10/52362-5)

SARTORI, GERALDO RODRIGUES; NASCIMENTO, ALESSANDRO S.. Comparative Analysis of Electrostatic Models for Ligand Docking. FRONTIERS IN MOLECULAR BIOSCIENCES, v. 6, . (15/13684-0, 17/18173-0, 15/26722-8)

LEITE, D. C. C.; GRANDIS, A.; TAVARES, E. Q. P.; PIOVEZANI, A. R.; PATTATHIL, S.; AVCI, U.; ROSSINI, A.; CAMBLER, A.; DE SOUZA, A. P.; HAHN, M. G.; et al. Cell wall changes during the formation of aerenchyma in sugarcane roots. ANNALS OF BOTANY, v. 120, n. 5, SI, p. 693-708, . (10/17104-5, 10/17070-3, 09/52840-7, 10/12833-9, 08/57908-6)

EVANGELISTA, DANILO ELTON; DE ARAUJO, EVANDRO A.; OLIVEIRA NETO, MARIO; SEIKI KADOWAKI, MARCO ANTONIO; POLIKARPOV, IGOR. Biochemical characterization and low-resolution SAXS structure of an exopolygalacturonase from Bacillus licheniformis. NEW BIOTECHNOLOGY, v. 40, n. B, p. 268-274, . (15/13684-0, 11/20505-4)

DE ARAUJO, EVANDRO ARES; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis. Applied Microbiology and Biotechnology, v. 103, n. 3, p. 1275-1287, . (15/13684-0)

NAKAMURA, ALINE M.; SEIKI KADOWAKI, MARCO ANTONIO; GODOY, ANDRE; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis. International Journal of Biological Macromolecules, v. 120, n. B, p. 1893-1905, . (11/20505-4)

MAQUERA-HUACHO, PATRICIA MILAGROS; TONON, CAROLINE CORADI; CORREIA, MARILIA FERREIRA; FRANCISCONI, RENATA SERIGNOLI; FERREIRA BORDINI, ESTER ALVES; MARCANTONIO, ELCIO; PALOMARI SPOLIDORIO, DENISE MADALENA. In vitro antibacterial and cytotoxic activities of carvacrol and terpinen-4-ol against biofilm formation on titanium implant surfaces. BIOFOULING, v. 34, n. 6, p. 699-709, . (15/08742-1, 09/54035-4)

BESSER, KATRIN; MALYON, GRAHAM P.; EBORALL, WILLIAM S.; DA CUNHA, GIOVANNI PARO; FILGUEIRAS, JEFFERSON G.; DOWLE, ADAM; GARCIA, LOURDES CRUZ; PAGE, SAMUEL J.; DUPREE, RAY; KERN, MARCELO; et al. Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans. NATURE COMMUNICATIONS, v. 9, . (15/13684-0, 17/24465-3)

BERTO, GABRIELA LEILA; VELASCO, JOSMAN; CABOS RIBEIRO, CAIO TASSO; ZANPHORLIN, LETICIA MARIA; DOMINGUES, MARIANE NORONHA; MURAKAMI, MARIO TYAGO; POLIKARPOV, IGOR; DE OLIVEIRA, LEANDRO CRISTANTE; FERRAZ, ANDRE; SEGATO, FERNANDO. Functional characterization and comparative analysis of two heterologous endoglucanases from diverging subfamilies of glycosyl hydrolase family 45. Enzyme and Microbial Technology, v. 120, p. 23-35, . (15/13684-0, 14/06923-6, 15/26982-0, 14/18714-2)

FERREIRA BORDINI, ESTER ALVES; TONON, CAROLINE CORADI; FRANCISCONI, RENATA SERIGNOLI; CINTRA MAGALHAES, FERNANDO AUGUSTO; MAQUERA HUACHO, PATRICIA MILAGROS; BEDRAN, TELMA LOMBARDO; PRATAVIEIRA, SEBASTIAO; SPOLIDORIO, LUIS CARLOS; SPOLIDORIO, DENISE PALOMARI. Antimicrobial effects of terpinen-4-ol against oral pathogens and its capacity for the modulation of gene expression. BIOFOULING, v. 34, n. 7, p. 815-825, . (15/08742-1, 09/54035-4, 14/23241-6)

PUHL, ANA C.; WEBB, PAUL; POLIKARPOV, IGOR. Structural dataset for the PPAR gamma V290M mutant. DATA IN BRIEF, v. 7, p. 1430-1437, . (06/00182-8)

DOS SANTOS, NATALIA GABRIELLY PEREIRA; MACIEL, EDVALDO VASCONCELOS SOARES; MEJIA-CARMONA, KAREN; LANCAS, FERNANDO MAURO. Multidimensional capillary liquid chromatography-tandem mass spectrometry for the determination of multiclass pesticides in ``sugarcane spirits{''} (cachacas). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, v. 412, n. 28, SI, p. 7789-7797, . (19/08168-4, 16/18079-0, 18/00082-0)

ANDRADE, SERGIO ARAUJO; PRATAVIEIRA, SEBASTIAO; BAGNATO, VANDERLEI SALVADOR; VAROTTI, FERNANDO DE PILLA. Use of wide-field optical fluorescence for visualization of oral biofilm in a patient with peri-implant mucositis: a new approach. Einstein (São Paulo), v. 19, . (14/50857-8, 13/07276-1, 09/54035-4)

ANDRADE, SERGIO ARAUJO; PRATAVIEIRA, SEBASTIAO; BAGNATO, VANDERLEI SALVADOR; VAROTTI, FERNANDO DE PILLA. Use of wide-field optical fluorescence for visualization of oral biofilm in a patient with peri-implant mucositis: a new approach. Einstein (São Paulo), v. 19, . (09/54035-4, 13/07276-1, 14/50857-8)

KANE, AISSATA OUSMANE; PELLERGINI, VANESSA O. ARNOLDI; ESPIRITO SANTO, MELISSA C.; NGOM, BALLA DIOP; GARCIA, JOSE M.; ACEVEDO, ALBERTO; ERAZZU, LUIS E.; POLIKARPOV, IGOR. Evaluating the Potential of Culms from Sugarcane and Energy Cane Varieties Grown in Argentina for Second-Generation Ethanol Production. WASTE AND BIOMASS VALORIZATION, . (15/13684-0)

BARRA, ANGELICA LUANA C.; ULLAH, NAJEEB; MORAO, LUANA G.; WRENGER, CARSTEN; BETZEL, CHRISTIAN; NASCIMENTO, ALESSANDRO S.. Structural Dynamics and Perspectives of Vitamin B6 Biosynthesis Enzymes in Plasmodium: Advances and Open Questions. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, v. 11, . (15/26722-8, 20/03983-9, 18/21213-6, 19/20219-3, 15/13684-0, 19/26428-3, 17/03966-4)

PELLEGRINI, VANESSA DE OLIVEIRA ARNOLDI; RATTI, REGIANE PRISCILA; FILGUEIRAS, JEFFERSON GONCALVES; FALVO, MAURICIO; CORAL, MARISA APARECIDA LIMA; GUIMARAES, FRANCISCO EDUARDO GONTIJO; DEAZEVEDO, EDUARDO RIBEIRO; POLIKARPOV, IGOR. Differences in chemical composition and physical properties caused by industrial storage on sugarcane bagasse result in its efficient enzymatic hydrolysis. SUSTAINABLE ENERGY & FUELS, . (15/13684-0)

ZHU, ZONGYUAN; REZENDE, CAMILA ALVES; SIMISTER, RACHAEL; MCQUEEN-MASON, SIMON J.; MACQUARRIE, DUNCAN J.; POLIKARPOV, IGOR; GOMEZ, LEONARDO D.. Efficient sugar production from sugarcane bagasse by microwave assisted acid and alkali pretreatment. BIOMASS & BIOENERGY, v. 93, p. 269-278, . Web of Science Citations: 30. (10/11135-6, 12/22119-7)

TAVARES, E. Q. P.; GRANDIS, A.; LEMBKE, C. G.; SOUZA, G. M.; PURGATTO, E.; DE SOUZA, A. P.; BUCKERIDGE, M. S.. Roles of auxin and ethylene in aerenchyma formation in sugarcane roots. PLANT SIGNALING & BEHAVIOR, v. 13, n. 3, . Web of Science Citations: 4. (13/16225-1, 09/52840-7, 08/57908-6, 10/17104-5, 11/07586-5)

BROGNARO, HEVILA; ALMEIDA, VITOR MEDEIROS; DE ARAUJO, EVANDRO ARES; PIYADOV, VASILY; MORIM SANTOS, MARIA AUXILIADORA; MARANA, SANDRO ROBERTO; POLIKARPOV, IGOR. Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 beta-Glycosidase from Saccharophagus degradans. MOLECULAR BIOTECHNOLOGY, v. 58, n. 12, p. 777-788, . Web of Science Citations: 1. (08/56255-9)

CAMILO, CESAR M.; POLIKARPOV, IGOR. High-throughput cloning, expression and purification of glycoside hydrolases using Ligation-Independent Cloning (LIC). Protein Expression and Purification, v. 99, p. 35-42, . Web of Science Citations: 21. (08/56255-9, 10/08680-2, 09/11536-3, 09/54035-4)

ELLENA, JAVIER; DE PAULA, KARINA; DE MELO, CRISTIANE C.; DA SILVA, CECILIA C. P.; BEZERRA, BEATRIZ P.; VENANCIO, TIAGO; AYALA, ALEJANDRO P.. Temperature-Driven Isosymmetric Reversible Phase Transition of the Hormone Estradiol 17 beta Valerate. Crystal Growth & Design, v. 14, n. 11, p. 5700-5709, . Web of Science Citations: 8. (09/54035-4)

BUCKERIDGE, MARCOS S.; DE SOUZA, AMANDA P.. Breaking the ``Glycomic Code{''} of Cell Wall Polysaccharides May Improve Second-Generation Bioenergy Production from Biomass. BioEnergy Research, v. 7, n. 4, p. 1065-1073, . Web of Science Citations: 0. (09/52840-7, 08/57908-6)

MELLO, BRUNO LUAN; POLIKARPOV, IGOR. Family 1 carbohydrate binding-modules enhance saccharification rates. AMB EXPRESS, v. 4, . Web of Science Citations: 17. (08/56255-9, 09/05349-6, 10/52362-5)

LIMA, MARISA A.; GOMEZ, LEONARDO D.; STEELE-KING, CLARE G.; SIMISTER, RACHAEL; BERNARDINELLI, OIGRES D.; CARVALHO, MARCELO A.; REZENDE, CAMILA A.; LABATE, CARLOS A.; DEAZEVEDO, EDUARDO R.; MCQUEEN-MASON, SIMON J.; et al. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production. BIOTECHNOLOGY FOR BIOFUELS, v. 7, . Web of Science Citations: 30. (08/56255-9, 10/52362-5, 09/18354-8, 10/08370-3, 10/11135-6)

GODOY, ANDRE S.; DE LIMA, MARIANA Z. T.; CAMILO, CESAR M.; POLIKARPOV, IGOR. Crystal structure of a putative exo-beta-1,3-galactanase from Bifidobacterium bifidum S17. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 72, n. 4, p. 288-293, . Web of Science Citations: 1. (08/56255-9, 09/52840-7, 11/05712-3, 11/20505-4, 09/05328-9)

SADRAEIAN, MOHAMMAD; GUIMARAES, FRANCISCO E. G.; ARAUJO, ANA P. U.; WORTHYLAKE, DAVID K.; LECOUR, LOUIS JR.; PINCUS, SETH H.. Selective cytotoxicity of a novel immunotoxin based on pulchellin A chain for cells expressing HIV envelope. SCIENTIFIC REPORTS, v. 7, . Web of Science Citations: 2. (13/07276-1, 09/54035-4)

EVANGELISTA, DANILO ELTON; SEIKI KADOWAKI, MARCO ANTONIO; MELLO, BRUNO LUAN; POLIKARPOV, IGOR. Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia. International Journal of Biological Macromolecules, v. 109, p. 560-568, . Web of Science Citations: 4. (15/13684-0, 11/20505-4, 11/21608-1, 10/52362-5)

COLUSSI, FRANCIELI; GARCIA, WANIUS; ROSSETO, FLAVIO RODOLFO; SOARES DE MELLO, BRUNO LUAN; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 41, n. 1, p. 89-98, . Web of Science Citations: 13. (10/16542-9, 09/54035-4, 10/08370-3)

TEXTOR, LARISSA C.; SANTOS, JADEMILSON C.; HIDALGO CUADRADO, NAZARET; ROIG, MANUEL G.; ZHADAN, GALINA G.; SHNYROV, VALERY L.; POLIKARPOV, IGOR. Purification, crystallization and preliminary crystallographic analysis of peroxidase from the palm tree Chamaerops excelsa. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 67, n. 12, p. 1641-1644, . Web of Science Citations: 1. (09/14333-6, 09/52840-7)

RAZZERA, GUILHERME; VERNAL, JAVIER; PORTUGAL, RODRIGO V.; CALGARO, MARCOS R.; FERNANDEZ, PABLO; ZAKIN, MARIO M.; POLIKARPOV, IGOR; TERENZI, HERNÁN. Expression, purification, and initial structural characterization of rat orphan nuclear receptor NOR-1 LBD domain. Protein Expression and Purification, v. 37, n. 2, p. 443-449, . (99/03387-4)

AMBROSIO, ANDRE L. B.; DIAS, SANDRA M. G.; POLIKARPOV, IGOR; ZURIER, ROBERT B.; BURSTEIN, SUMNER H.; GARRATT, RICHARD C.. Ajulemic acid, a synthetic nonpsychoactive cannabinoid acid, bound to the ligand binding domain of the human peroxisome proliferator-activated receptor gamma. Journal of Biological Chemistry, v. 282, n. 25, p. 18625-18633, . (06/00182-8, 98/14138-2, 99/03387-4)

CALGARO, MARCOS R.; OLIVEIRA NETO, MARIO DE; FIGUEIRA, ANA CAROLINA M.; SANTOS, MARIA A. M.; PORTUGAL, RODRIGO V.; GUZZI, CAROLINA A.; SAIDEMBERG, DANIEL M.; BLEICHER, LUCAS; VERNAL, JAVIER; FERNANDEZ, PABLO; et al. Orphan nuclear receptor NGFI-B forms dimers with nonclassical interface. Protein Science, v. 16, n. 8, p. 1762-1772, .

DE MOURA, PATRICIA RIBEIRO; WATANABE, LEANDRA; BLEICHER, LUCAS; COLAU, DIDIER; DUMOUTIER, LAURE; LEMAIRE, MURIEL M.; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystal structure of a soluble decoy receptor IL-22BP bound to interleukin-22. FEBS Letters, v. 583, n. 7, p. 1072-1077, . Web of Science Citations: 30. (06/01534-5, 06/00182-8)

SANTOS, MARIA A. M.; SANTOS, SILVIA M.; MATOZO, HUITA C.; PORTUGAL, RODRIGO V.; IULIANO, RODOLFO; FUSCO, ALFREDO; POLIKARPOV, IGOR. Expression, purification, and characterization of rat protein tyrosine phosphatase eta catalytic domain. Protein Expression and Purification, v. 41, n. 1, p. 113-120, . (99/03387-4)

KRAUCHENCO‚ S.; NAGEM‚ R.A.P.; DA SILVA‚ J.A.; MARANGONI‚ S.; POLIKARPOV‚ I.. Three-dimensional structure of an unusual Kunitz (STI) type trypsin inhibitor from Copaifera langsdorffii. Biochimie, v. 86, n. 3, p. 167-172, . (99/03387-4)

MATOZO‚ H.C.; SANTOS‚ M.A.M.; DE OLIVEIRA NETO‚ M.; BLEICHER‚ L.; LIMA‚ L.M.T.R.; IULIANO‚ R.; FUSCO‚ A.; POLIKARPOV‚ I.. Low-Resolution Structure and Fluorescence Anisotropy Analysis of Protein Tyrosine Phosphatase [eta] Catalytic Domain. BIOPHYSICAL JOURNAL, v. 92, n. 12, p. 4424-4432, . (99/03387-4, 06/00182-8)

DE ARAUJO, ALEXANDRE SUMAN; MARTINEZ, LEANDRO; NICOLUCI, RICARDO DE PAULA; SKAF, MUNIR S.; POLIKARPOV, IGOR. Structural modeling of high-affinity thyroid receptor-ligand complexes. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 39, n. 11, p. 1523-1536, . (06/00182-8, 06/06831-8, 06/01977-4)

SADRAEIAN, MOHAMMAD; GUIMARAES, FRANCISCO E. G.; ARAUJO, ANA P. U.; WORTHYLAKE, DAVID K.; LECOUR, LOUIS JR.; PINCUS, SETH H.. Selective cytotoxicity of a novel immunotoxin based on pulchellin A chain for cells expressing HIV envelope. SCIENTIFIC REPORTS, v. 7, . (13/07276-1, 09/54035-4)

TAVARES, E. Q. P.; GRANDIS, A.; LEMBKE, C. G.; SOUZA, G. M.; PURGATTO, E.; DE SOUZA, A. P.; BUCKERIDGE, M. S.. Roles of auxin and ethylene in aerenchyma formation in sugarcane roots. PLANT SIGNALING & BEHAVIOR, v. 13, n. 3, . (10/17104-5, 13/16225-1, 09/52840-7, 11/07586-5, 08/57908-6)

FARRO, ERICK GIANCARLO S.; LEITE, ANA ELISA T.; SILVA, ISABELA A.; FILGUEIRAS, JEFFERSON G.; DE AZEVEDO, EDUARDO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis. International Journal of Biological Macromolecules, v. 117, p. 7-16, . (14/03768-0, 14/06565-2, 15/13684-0)

ZHU, ZONGYUAN; REZENDE, CAMILA ALVES; SIMISTER, RACHAEL; MCQUEEN-MASON, SIMON J.; MACQUARRIE, DUNCAN J.; POLIKARPOV, IGOR; GOMEZ, LEONARDO D.. Efficient sugar production from sugarcane bagasse by microwave assisted acid and alkali pretreatment. BIOMASS & BIOENERGY, v. 93, p. 269-278, . (12/22119-7, 10/11135-6)

GODOY, ANDRE S.; DE LIMA, MARIANA Z. T.; CAMILO, CESAR M.; POLIKARPOV, IGOR. Crystal structure of a putative exo-beta-1,3-galactanase from Bifidobacterium bifidum S17. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 72, n. 4, p. 288-293, . (11/05712-3, 08/56255-9, 09/52840-7, 09/05328-9, 11/20505-4)

EVANGELISTA, DANILO ELTON; SEIKI KADOWAKI, MARCO ANTONIO; MELLO, BRUNO LUAN; POLIKARPOV, IGOR. Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia. International Journal of Biological Macromolecules, v. 109, p. 560-568, . (15/13684-0, 11/21608-1, 10/52362-5, 11/20505-4)

MACHADO, THIAGO S.; MACABELLI, CAROLINA H.; DEL COLLADO, MAITE; MEIRELLES, V, FLAVIO; GUIMARAES, FRANCISCO E. G.; CHIARATTI, MARCOS R.. Evidence of Selection Against Damaged Mitochondria During Early Embryogenesis in the Mouse. FRONTIERS IN GENETICS, v. 11, . (12/50231-6, 13/13869-5, 09/54035-4, 12/12951-7, 17/05899-2, 17/04372-0)

FRANCISCONI, RENATA SERIGNOLI; MAQUERA-HUACHO, PATRICIA MILAGROS; TONON, CAROLINE CORADI; FIORAMONTI CALIXTO, GIOVANA MARIA; ORLANDI SARDI, JANAINA DE CASSIA; CHORILLI, MARLUS; PALOMARI SPOLIDORIO, DENISE MADALENA. Terpinen-4-ol and nystatin co-loaded precursor of liquid crystalline system for topical treatment of oral candidiasis. SCIENTIFIC REPORTS, v. 10, n. 1, . (15/08742-1, 14/23241-6, 09/54035-4)

ARNOLDI PELLEGRINI, VANESSA DE OLIVEIRA; VEIGA SEPULCHRO, ANA GABRIELA; POLIKARPOV, IGOR. Enzymes for lignocellulosic biomass polysaccharide valorization and production of nanomaterials. CURRENT OPINION IN GREEN AND SUSTAINABLE CHEMISTRY, v. 26, . (15/13684-0)

SEPULCHRO, V, ANA GABRIELA; PELLEGRINI, VANESSA O. A.; DIAS, LUCAS D.; KADOWAKI, MARCO A. S.; CANNELLA, DAVID; POLIKARPOV, IGOR. Combining pieces: a thorough analysis of light activation boosting power and co-substrate preferences for the catalytic efficiency of lytic polysaccharide monooxygenase MtLPMO9A. BIOFUEL RESEARCH JOURNAL-BRJ, v. 8, n. 3, p. 1454-1464, . (18/22300-0, 15/13684-0, 19/13569-8)

CORREA, THAILA QUATRINI; BLANCO, KATE CRISTINA; GARCIA, ERICA BOER; LARA PEREZ, SHIRLY MARLENY; CHIANFRONE, DANIEL JOSE; MORAIS, VINICIUS SIGARI; BAGNATO, VANDERLEI SALVADOR. Effects of ultraviolet light and curcumin-mediated photodynamic inactivation on microbiological food safety: A study in meat and fruit. Photodiagnosis and Photodynamic Therapy, v. 30, . (09/54035-4, 13/07276-1, 14/50857-8)

GARCIA, MARLON RODRIGUES; REQUENA, MICHELLE BARRETO; PRATAVIEIRA, SEBASTIAO; MORIYAMA, LILIAN TAN; BECKER, MARCELO; BAGNATO, VANDERLEI SALVADOR; KURACHI, CRISTINA; MAGALHAES, DANIEL VARELA. Development of a system to treat and online monitor photodynamic therapy of skin cancer using PpIX near-infrared fluorescence. Photodiagnosis and Photodynamic Therapy, v. 30, . (09/54035-4, 13/07276-1, 14/50857-8)

SKAF, MUNIR SALOMAO; POLIKARPOV, IGOR; STANKOVIC, IVANA M.. A linker of the proline-threonine repeating motif sequence is bimodal. Journal of Molecular Modeling, v. 26, n. 7, . (08/56255-9, 10/08680-2, 09/54035-4)

GARCIA, BRUNA M.; MACHADO, THIAGO S.; CARVALHO, KAREN F.; NOLASCO, PATRICIA; NOCITI, RICARDO P.; DEL COLLADO, MAITE; CAPO BIANCO, MARIA J. D.; GREJO, MATEUS P.; AUGUSTO NETO, JOSE DJACI; SUGIYAMA, FABRICIA H. C.; et al. Mice born to females with oocyte-specific deletion of mitofusin 2 have increased weight gain and impaired glucose homeostasis. MOLECULAR HUMAN REPRODUCTION, v. 26, n. 12, p. 938-952, . (10/51906-1, 17/05899-2, 17/04372-0, 18/20028-0, 18/06119-3, 16/11935-9, 09/54035-4, 12/50231-6, 16/11942-5)

PRATAVIEIRA, SEBASTIAO; ULIANA, MARCIANA PIERINA; DOS SANTOS LOPES, NAHRYDA SAMARA; DONATONI, MARIA CAROLINA; LINARES, DIANA RODRIGUEZ; ANIBAL, FERNANDA DE FREITAS; DE OLIVEIRA, KLEBER THIAGO; KURACHI, CRISTINA; OLIVEIRA DE SOUZA, CLOVIS WESLEY. Photodynamic therapy with a new bacteriochlorin derivative: Characterization and in vitro studies. Photodiagnosis and Photodynamic Therapy, v. 34, . (09/54035-4, 14/50857-8, 08/57858-9, 13/07276-1)

VIEIRA, PLINIO S.; BONFIM, ISABELA M.; ARAUJO, EVANDRO A.; MELO, RICARDO R.; LIMA, AUGUSTO R.; FESSEL, MELISSA R.; PAIXAO, DOUGLAS A. A.; PERSINOTI, GABRIELA F.; ROCCO, SILVANA A.; LIMA, TATIANI B.; et al. Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors. NATURE COMMUNICATIONS, v. 12, n. 1, . (17/14253-9, 15/26982-0, 16/06509-0, 15/13684-0, 18/03724-3, 19/13936-0, 17/00203-0, 16/19995-0)

KADOWAKI, MARCO A. S.; BRIGANTI, LORENZO; EVANGELISTA, DANILO E.; ECHEVARRIA-POZA, ALBERTO; TRYFONA, THEODORA; PELLEGRINI, VANESSA O. A.; NAKAYAMA, DARLAN G.; DUPREE, PAUL; POLIKARPOV, IGOR. Unlocking the structural features for the xylobiohydrolase activity of an unusual GH11 member identified in a compost-derived consortium. Biotechnology and Bioengineering, v. 118, n. 10, . (15/13684-0)

VELDMAN, WAYDE; LIBERATO, MARCELO VIZONA; ALMEIDA, VITOR M.; SOUZA, VALQUIRIA P.; FRUTUOSO, MAIRA A.; MARANA, SANDRO R.; MOSES, VUYANI; BISHOP, OZLEM TASTAN; POLIKARPOV, IGOR. X-ray Structure, Bioinformatics Analysis, and Substrate Specificity of a 6-Phospho-beta-glucosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 60, n. 12, p. 6392-6407, . (15/13684-0)

VACILOTTO, MILENA MOREIRA; ARNOLDI PELLEGRINI, VANESSA O.; VEIGA SEPULCHRO, ANA GABRIELA; DE MELLO CAPETTI, CAIO C.; CURVELO, ANTONIO APRIGIO S.; MARCONDES, WILIAN FIORELI; ARANTES, VALDEIR; POLIKARPOV, IGOR. Paludibacter propionicigenes GH10 xylanase as a tool for enzymatic xylooligosaccharides production from heteroxylans. Carbohydrate Polymers, v. 275, . (15/13684-0)

DE FARIA, CLARA M. G.; BARRERA-PATINO, CLAUDIA P.; SANTANA, JHONE P. P.; DA SILVA DE AVO, LUCIMAR R.; BAGNATO, VANDERLEI S.. Tumor radiosensitization by photobiomodulation. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, v. 225, . (09/54035-4)

VELDMAN, WAYDE; LIBERATO, MARCELO VIZONA; SOUZA, VALQUIRIA P.; ALMEIDA, VITOR M.; MARANA, SANDRO R.; BISHOP, OZLEM TASTAN; POLIKARPOV, IGOR. Differences in Gluco and Galacto Substrate-Binding Interactions in a Dual 6P beta-Glucosidase/6P beta-Galactosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 61, n. 9, p. 4554-4570, . (15/13684-0)

SEIKI KADOWAKI, MARCO ANTONIO; RABELO HIGASI, PAULA MIWA; DE GODOY, MARIANA ORTIZ; DE ARAUJO, EVANDRO ARES; GODOY, ANDRE SCHUTZER; PRADE, ROLF ALEXANDER; POLIKARPOV, IGOR. Enzymatic versatility and thermostability of a new aryl-alcohol oxidase from Thermothelomyces thermophilus M77. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, v. 1864, n. 10, . (15/13684-0, 11/20505-4)

ROSSETO, FLAVIO R.; PUHL, ANA C.; ANDRADE, MAXUEL O.; POLIKARPOV, IGOR. Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 2, p. 137-140, . (08/56255-9, 07/08706-9, 10/52362-5, 09/05349-6)

PUHL, ANA C.; BERNARDES, AMANDA; SILVEIRA, RODRIGO L.; YUAN, JING; CAMPOS, JESSICA L. O.; SAIDEMBERG, DANIEL M.; PALMA, MARIO S.; CVORO, ALEKSANDRA; AYERS, STEPHEN D.; WEBB, PAUL; et al. Mode of Peroxisome Proliferator-Activated Receptor gamma Activation by Luteolin. MOLECULAR PHARMACOLOGY, v. 81, n. 6, p. 788-799, . (10/08680-2)

BATISTA, FERNANDA A. H.; TRIVELLA, DANIELA B. B.; BERNARDES, AMANDA; GRATIERI, JOYCE; OLIVEIRA, PAULO S. L.; FIGUEIRA, ANA CAROLINA M.; WEBB, PAUL; POLIKARPOV, IGOR. Structural Insights into Human Peroxisome Proliferator Activated Receptor Delta (PPAR-Delta) Selective Ligand Binding. PLoS One, v. 7, n. 5, . (10/17048-8, 09/53853-5, 06/00182-8)

COLUSSI, FRANCIELI; TEXTOR, LARISSA C.; SERPA, VIVIANE; MAEDA, ROBERTO NOBUYUKI; PEREIRA, JR., NEI; POLIKARPOV, IGOR. Purification, crystallization and preliminary crystallographic analysis of the catalytic domain of the extracellular cellulase CBHI from Trichoderma harzianum. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 66, n. 9, p. 1041-1044, . (07/08706-9, 09/05349-6)

FIGUEIRA, A. C. M.; SAIDEMBERG, D. M.; SOUZA, P. C. T.; MARTINEZ, L.; SCANLAN, T. S.; BAXTER, J. D.; SKAF, M. S.; PALMA, M. S.; WEBB, P.; POLIKARPOV, I.. Analysis of Agonist and Antagonist Effects on Thyroid Hormone Receptor Conformation by Hydrogen/Deuterium Exchange. MOLECULAR ENDOCRINOLOGY, v. 25, n. 1, p. 15-31, . (06/00182-8, 08/00078-1)

WATANABE, LEANDRA; DE MOURA, PATRICIA RIBEIRO; NASCIMENTO, ALESSANDRO SILVA; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of human IL-22 bound to its soluble decoy receptor IL-22BP. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 65, n. 2, p. 102-104, . (06/00182-8, 06/01534-5)

KRAUCHENCO, SANDRA; MARTINS, NADIA H.; SANCHES, MARIO; POLIKARPOV, IGOR. Effectiveness of commercial inhibitors against subtype F HIV-1 protease. Journal of Enzyme Inhibition and Medicinal Chemistry, v. 24, n. 3, p. 638-645, . (06/00182-8, 99/03387-4)

KIM, KYOUNG-YUN; NASCIMENTO, ALESSANDRO S.; GOLUBEV, ALEXANDER M.; POLIKARPOV, IGOR; KIM, CHUNG-SEI; KANG, SU-IL; KIM, SU-IL. Catalytic mechanism of inulinase from Arthrobacter sp. S37. Biochemical and Biophysical Research Communications, v. 371, n. 4, p. 600-605, . (06/00182-8)

NASCIMENTO, ALESSANDRO S.; KRAUCHENCO, SANDRA; GOLUBEV, ALEXANDER M.; GUSTCHINA, ALLA; WLODAWER, ALEXANDER; POLIKARPOV, IGOR. Statistical coupling analysis of aspartic proteinases based on crystal structures of the Trichoderma reesei enzyme and its complex with pepstatin A. Journal of Molecular Biology, v. 382, n. 3, p. 763-778, . (99/03387-4)

WATANABE, LEANDRA; DE MOURA, PATRICIA RIBEIRO; BLEICHER, LUCAS; NASCIMENTO, ALESSANDRO S.; ZAMORANO, LAURA S.; CALVETE, JUAN J.; SANZ, LIBIA; PEREZ, ALICIA; BURSAKOV, SERGEY; ROIG, MANUEL G.; et al. Crystal structure and statistical coupling analysis of highly glycosylated peroxidase from royal palm tree (Roystonea regia). Journal of Structural Biology, v. 169, n. 2, p. 226-242, . (06/00182-8)

MIGLIORINI FIGUEIRA, ANA CAROLINA; LIMA, LUIS MAURICIO T. R.; LIMA, LEONARDO H. F.; RANZANI, AMERICO T.; MULE, GUILHERME DOS SANTOS; POLIKARPOV, IGOR. Recognition by the Thyroid Hormone Receptor of Canonical DNA Response Elements. BIOCHEMISTRY, v. 49, n. 5, p. 893-904, . (06/00182-8, 08/00078-1)

TEXTOR, LARISSA C.; COLUSSI, FRANCIELI; SILVEIRA, RODRIGO L.; SERPA, VIVIANE; DE MELLO, BRUNO L.; MUNIZ, JOAO RENATO C.; SQUINA, FABIO M.; PEREIRA, JR., NEI; SKAF, MUNIR S.; POLIKARPOV, IGOR. Joint X-ray crystallographic and molecular dynamics study of cellobiohydrolase I from Trichoderma harzianum: deciphering the structural features of cellobiohydrolase catalytic activity. FEBS Journal, v. 280, n. 1, p. 56-69, . (10/08680-2, 09/54035-4)

REZENDE, CAMILA ALVES; DE LIMA, MARISA APARECIDA; MAZIERO, PRISCILA; DEAZEVEDO, EDUARDO RIBEIRO; GARCIA, WANIUS; POLIKARPOV, IGOR. Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility. BIOTECHNOLOGY FOR BIOFUELS, v. 4, p. 1-18, . (10/11135-6, 10/08370-3, 09/18354-8)

NAGEM, RONALDO ALVES PINTO; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; OGATA, CRAIG; POLIKARPOV, IGOR. Crystal structure of recombinant human interleukin-22. Structure, v. 10, n. 8, p. 1051-1062, . (99/03387-4)

NASCIMENTO, ALESSANDRO S.; DIAS, SANDRA MARTHA GOMES; NUNES, FÁBIO M.; APARÍCIO, RICARDO; AMBROSIO, ANDRE L. B.; BLEICHER, LUCAS; FIGUEIRA, ANA CAROLINA M.; SANTOS, MARIA AUXILIADORA M.; OLIVEIRA NETO, MÁRIO DE; FISCHER, HANNES; et al. Structural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function. Journal of Molecular Biology, v. 360, n. 3, p. 586-598, . (06/00182-8)

MARTINS, NÁDIA HELENA; CALAZANS, ALEXANDRE; BRINDEIRO, RODRIGO DE MORAES; TANURI, AMILCAR; ANTUNES, OCTAVIO AUGUSTO CEVA; POLIKARPOV, IGOR; SANCHES, MARIO. Crystallization of a non-B and a B mutant HIV protease. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, v. 60, n. 9, p. 1625-1627, . (99/03387-4)

GONSALVES DE FARIA, CLARA MARIA; INADA, NATALIA MAYUMI; VOLLET-FILHO, JOSE DIRCEU; BAGNATO, VANDERLEI SALVADOR. A threshold dose distribution approach for the study of PDT resistance development A threshold distribution approach for the study of PDT resistance. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, v. 182, p. 85-91, . (15/06579-6, 13/07276-1, 09/54035-4)

BERNARDES, A.; PELLEGRINI, V. O. A.; CURTOLO, F.; CAMILO, C. M.; MELLO, B. L.; JOHNS, M. A.; SCOTT, J. L.; GUIMARAES, F. E. C.; POLIKARPOV, I.. Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate. Carbohydrate Polymers, v. 211, p. 57-68, . (15/13684-0, 10/18773-8)

ROMANO, RENAN A.; PRATAVIEIRA, SEBASTIAO; DA SILVA, ANA P.; KURACHI, CRISTINA; GUIMARAES, FRANCISCO E. G.. Light-driven photosensitizer uptake increases Candida albicans photodynamic inactivation. Journal of Biophotonics, v. 10, n. 11, SI, p. 1538-1546, . (13/07276-1, 09/54035-4)

FLORINDO, RENATA N.; SOUZA, VALQUIRIA P.; MUTTI, HEMILY S.; CAMILO, CESAR; MANZINE, LIVIA REGINA; MARANA, SANDRO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. Structural insights into beta-glucosidase transglycosylation based on biochemical, structural and computational analysis of two GH1 enzymes from Trichoderma harzianum. NEW BIOTECHNOLOGY, v. 40, n. B, p. 218-227, . (14/19439-5, 08/56255-9, 14/06565-2)

ALESSI, ANNA M.; BIRD, SUSANNAH M.; BENNETT, JOSEPH P.; OATES, NICOLA C.; LI, YI; DOWLE, ADAM A.; POLIKARPOV, IGOR; YOUNG, J. PETER W.; MCQUEEN-MASON, SIMON J.; BRUCE, NEIL C.. Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. SCIENTIFIC REPORTS, v. 7, . (10/52362-5)

ALESSI, ANNA M.; BIRD, SUSANNAH M.; OATES, NICOLA C.; LI, YI; DOWLE, ADAM A.; NOVOTNY, ETELVINO H.; DEAZEVEDO, EDUARDO R.; BENNETT, JOSEPH P.; POLIKARPOV, IGOR; YOUNG, J. PETER W.; et al. Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies. BIOTECHNOLOGY FOR BIOFUELS, v. 11, . (10/52362-5)

PIIADOV, VASSILI; DE ARAUJO, EVANDRO ARES; OLIVEIRA NETO, MARIO; CRAIEVICH, ALDO FELIX; POLIKARPOV, IGOR. SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. Protein Science, v. 28, n. 2, p. 454-463, . (15/13684-0, 14/00769-5)

KADOWAKI, MARCO A. S.; HIGASI, PAULA; DE GODOY, MARIANA O.; PRADE, ROLF A.; POLIKARPOV, IGOR. Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthora thermophila. FEBS Journal, v. 285, n. 3, p. 559-579, . (09/52840-7, 15/13684-0, 11/20505-4)

GODOY, ANDRE S.; PEREIRA, CAROLINE S.; RAMIA, MARINA PAGLIONE; SILVEIRA, RODRIGO L.; CAMILO, CESAR M.; KADOWAKI, MARCO A.; LANGE, LENE; BUSK, PETER K.; NASCIMENTO, ALESSANDRO S.; SKAF, MUNIR S.; et al. Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members. SCIENTIFIC REPORTS, v. 8, . (15/13684-0, 11/21608-1, 10/52362-5, 11/20505-4)

SEIKI KADOWAKI, MARCO ANTONIO; DE GODOY, MARIANA ORTIZ; KUMAGAI, PATRICIA SUEMY; DA COSTA-FILHO, ANTONIO JOSE; MORT, ANDREW; PRADE, ROLF ALEXANDER; POLIKARPOV, IGOR. Characterization of a New Glyoxal Oxidase from the Thermophilic Fungus Myceliophthora thermophila M77: Hydrogen Peroxide Production Retained in 5-Hydroxymethylfurfural Oxidation. CATALYSTS, v. 8, n. 10, . (15/13684-0, 11/20505-4)

TOMAZINI, ATILIO; HIGASI, PAULA; MANZINE, LIVIA R.; STOTT, MATTHEW; SPARLING, RICHARD; LEVIN, DAVID B.; POLIKARPOV, IGOR. A novel thermostable GH5 beta-xylosidase from Thermogemmatispora sp. T81. NEW BIOTECHNOLOGY, v. 53, p. 57-64, . (15/13684-0)

SEPULCHRO, ANA GABRIELA VEIGA; PELLEGRINI, VANESSA O. A.; BRIGANTI, LORENZO; DE ARAUJO, EVANDRO A.; DE ARAUJO, SIMARA S.; POLIKARPOV, IGOR. Transformation of xylan into value-added biocommodities using Thermobacillus composti GH10 xylanase. Carbohydrate Polymers, v. 247, . (15/13684-0)

BARRERA-PATINO, C. P.; VOLLET-FILHO, J. D.; TEIXEIRA-ROSA, R. G.; QUIROZ, H. P.; DUSSAN, A.; INADA, N. M.; BAGNATO, V. S.; REY-GONZALEZ, R. R.. Photonic effects in natural nanostructures on Morpho cypris and Greta oto butterfly wings. SCIENTIFIC REPORTS, v. 10, n. 1, . (09/54035-4, 13/07276-1)

BARRA, ANGELICA LUANA C.; DANTAS, LIVIA DE OLIVEIRA C.; MORAO, LUANA GALVAO; GUTIERREZ, RAISSA F.; POLIKARPOV, IGOR; WRENGER, CARSTEN; NASCIMENTO, ALESSANDRO S.. Essential Metabolic Routes as a Way to ESKAPE From Antibiotic Resistance. FRONTIERS IN PUBLIC HEALTH, v. 8, . (15/13684-0, 17/18173-0, 15/26722-8)

GRANDIS, ADRIANA; ARENQUE-MUSA, BRUNA C.; MARTINS, MARINA C. M.; MACIEL, THAIS OLIVAR; SIMISTER, RACHAEL; GOMEZ, LEONARDO D.; BUCKERIDGE, MARCOS S.. Senna reticulata: a Viable Option for Bioenergy Production in the Amazonian Region. BioEnergy Research, v. 14, n. 1, p. 91-105, . (14/50884-5, 18/03764-5, 08/57908-6, 09/52840-7)

CARVALHO, KAREN F.; MACHADO, THIAGO S.; GARCIA, BRUNA M.; ZANGIROLAMO, AMANDA F.; MACABELLI, CAROLINA H.; SUGIYAMA, FABRICIA H. C.; GREJO, MATEUS P.; NETO, J. DJACI AUGUSTO; TOSTES, KATIANE; RIBEIRO, FERNANDA K. S.; et al. Mitofusin 1 is required for oocyte growth and communication with follicular somatic cells. FASEB JOURNAL, v. 34, n. 6, . (16/11942-5, 12/50231-6, 13/08135-2, 17/04372-0, 09/54035-4, 16/07868-4, 16/11935-9)

JIANG, WENFENG; QU, ZHI-BEI; KUMAR, PRASHANT; VECCHIO, DREW; WANG, YUEFEI; MA, YU; BAHNG, JOONG HWAN; BERNARDINO, KALIL; GOMES, WEVERSON R.; COLOMBARI, FELIPPE M.; et al. Emergence of complexity inhierarchically organized chiral particles. Science, v. 368, n. 6491, SI, p. 642+, . (09/54035-4, 17/12063-8, 13/07296-2, 12/15147-4)

KELLER, M. B.; FELBY, C.; LABATE, C. A.; PELLEGRINI, V. O. A.; HIGASI, P.; SINGH, R. K.; POLIKARPOV, I.; BLOSSOM, B. M.. A simple enzymatic assay for the quantification of C1-specific cellulose oxidation by lytic polysaccharide monooxygenases. Biotechnology Letters, v. 42, n. 1, p. 93-102, . (17/01165-4, 15/13684-0)

HIGASI, PAULA M. R.; VELASCO, JOSMAN A.; PELLEGRINI, VANESSA O. A.; DE ARAUJO, EVANDRO A.; FRANCA, BRUNO ALVES; KELLER, MALENE B.; LABATE, CARLOS A.; BLOSSOM, BENEDIKT M.; SEGATO, FERNANDO; POLIKARPOV, IGOR. Light-stimulated T. thermophilus two-domain LPMO9H: Low-resolution SAXS model and synergy with cellulases. Carbohydrate Polymers, v. 260, . (15/13684-0, 17/01165-4)

NAGEM‚ R.A.P.; POLIKARPOV‚ I.; DAUTER‚ Z.. Phasing on rapidly soaked ions. Methods in Enzymology, v. 374, p. 120-137, .

EVANGELISTA, DANILO ELTON; ARNOLDI PELLEGRIN, VANESSA DE OLIVEIRA; SANTO, MELISSA ESPIRITO; MCQUEEN-MASON, SIMON; BRUCE, NEIL C.; POLIKARPOV, IGOR. Biochemical characterization and low-resolution SAXS shape of a novel GH11 exo-1,4-beta-xylanase identified in a microbial consortium. Applied Microbiology and Biotechnology, v. 103, n. 19, p. 8035-8049, . (15/13684-0, 11/21608-1, 10/52362-5, 11/20505-4)

PRATES, ERICA T.; STANKOVIC, IVANA; SILVEIRA, RODRIGO L.; LIBERATO, MARCELO V.; HENRIQUE-SILVA, FLAVIO; PEREIRA, JR., NEI; POLIKARPOV, IGOR; SKAF, MUNIR S.. X-ray Structure and Molecular Dynamics Simulations of Endoglucanase 3 from Trichoderma harzianum: Structural Organization and Substrate Recognition by Endoglucanases That Lack Cellulose Binding Module. PLoS One, v. 8, n. 3, . (08/56255-9, 10/08680-2, 09/54035-4)

MIOTTO, LIS SCHWARTZ; DE REZENDE, CAMILA ALVES; BERNARDES, AMANDA; SERPA, VIVIANE ISABEL; TSANG, ADRIAN; POLIKARPOV, IGOR. The Characterization of the Endoglucanase Cel12A from Gloeophyllum trabeum Reveals an Enzyme Highly Active on beta-Glucan. PLoS One, v. 9, n. 9, . (10/52362-5, 08/56255-9, 09/52840-7, 12/22802-9, 09/08233-9)

BERNARDINELLI, OIGRES DANIEL; LIMA, MARISA APARECIDA; REZENDE, CAMILA ALVES; POLIKARPOV, IGOR; DEAZEVEDO, EDUARDO RIBEIRO. Quantitative C-13 MultiCP solid-state NMR as a tool for evaluation of cellulose crystallinity index measured directly inside sugarcane biomass. BIOTECHNOLOGY FOR BIOFUELS, v. 8, . (10/08370-3, 10/52362-5, 10/11135-6, 08/56255-9, 09/18354-8)

LIBERATO, MARCELO VIZONA; NASCIMENTO, ALESSANDRO S.; AYERS, STEVEN D.; LIN, JEAN Z.; CVORO, ALEKSANDRA; SILVEIRA, RODRIGO L.; MARTINEZ, LEANDRO; SOUZA, PAULO C. T.; SAIDEMBERG, DANIEL; DENG, TUO; et al. Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (PPAR) gamma Activators and Pan-PPAR Partial Agonists. PLoS One, v. 7, n. 5, . (06/00182-8, 06/06831-8)

ROSSETO, FLAVIO RODOLFO; MANZINE, LIVIA REGINA; NETO, MARIO DE OLIVEIRA; POLIKARPOV, IGOR. Biophysical and biochemical studies of a major endoglucanase secreted by Xanthomonas campestris pv. campestris.. Enzyme and Microbial Technology, v. 91, p. 1-7, . (10/08370-3, 08/56255-9, 10/16542-9, 09/54035-4)

MARTINEZ, LEANDRO; NASCIMENTO, ALESSANDRO S.; NUNES, FABIO M.; PHILLIPS, KEVIN; APARICIO, RICARDO; DIAS, SANDRA MARTHA G.; FIGUEIRA, ANA CAROLINA M.; LIN, JEAN H.; NGUYEN, PHUONG; APRILETTI, JAMES W.; et al. Gaining ligand selectivity in thyroid hormone receptors via entropy. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 106, n. 49, p. 20717-20722, . (06/00182-8)

MAZIERO, PRISCILA; DE OLIVEIRA NETO, MARIO; MACHADO, DOUGLAS; BATISTA, TATIANA; SCHMITT CAVALHEIRO, CARLA CRISTINA; NEUMANN, MIGUEL G.; CRAIEVICH, ALDO FELIX; DE MORAES ROCHA, GEORGE JACKSON; POLIKARPOV, IGOR; GONCALVES, ADILSON ROBERTO. Structural features of lignin obtained at different alkaline oxidation conditions from sugarcane bagasse. INDUSTRIAL CROPS AND PRODUCTS, v. 35, n. 1, p. 61-69, . (10/16542-9, 09/00874-5)

GOLUBEV, ALEXANDER M.; ROJAS, ADRIANA L.; NASCIMENTO, ALESSANDRO S.; BLEICHER, LUCAS; KULMINSKAYA, ANNA A.; ENEYSKAYA, ELENA V.; POLIKARPOV, IGOR. Crystallization and Preliminary Crystallographic Analysis of Laminarinase from Rhodothermus marinus: A Case of Pseudomerohedral Twinning. PROTEIN AND PEPTIDE LETTERS, v. 15, n. 10, p. 1142-1144, . (06/00182-8)

GARCIA, WANIUS; FIGUEIRA, ANA CAROLINA M.; NETO, MARIO DE OLIVEIRA; DE GUZZI, CAROLINA A.; BUZZA, HILDE H.; PORTUGAL, RODRIGO V.; CALGARO, MARCOS R.; POLIKARPOV, IGOR. Probing conformational changes in orphan nuclear receptor: The NGFI-B intermediate is a partially unfolded dimer. Biophysical Chemistry, v. 137, n. 2-3, p. 81-87, . (06/00182-8)

BLEICHER, LUCAS; DE MOURA, PATRICIA RIBEIRO; WATANABE, LEANDRA; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystal structure of the IL-22/IL-22R1 complex and its implications for the IL-22 signaling mechanism. FEBS Letters, v. 582, n. 20, p. 2985-2992, . (06/00182-8, 06/01534-5)

MARTINEZ, LEANDRO; POLIKARPOV, IGOR; SKAF, MUNIR S.. Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: Simulations using a novel multipoint steered molecular dynamics approach. Journal of Physical Chemistry B, v. 112, n. 34, p. 10741-10751, . (06/00182-8, 06/06831-8)

BERNARDES, AMANDA; TEXTOR, LARISSA C.; SANTOS, JADEMILSON C.; CUADRADO, NAZARET HIDALGO; KOSTETSKY, EDUARD YA.; ROIG, MANUEL G.; BAVRO, VASSILIY N.; MUNIZ, JOAO R. C.; SHNYROV, VALERY L.; POLIKARPOV, IGOR. Crystal structure analysis of peroxidase from the palm tree Chamaerops excelsa. Biochimie, v. 111, p. 58-69, . (10/52362-5, 08/56255-9, 12/22802-9, 09/05349-6)

SEIKI KADOWAKI, MARCO ANTONIO; CAMILO, CESAR MOISES; MUNIZ, AMANDA BERNARDES; POLIKARPOV, IGOR. Functional Characterization and Low-Resolution Structure of an Endoglucanase Cel45A from the Filamentous Fungus Neurospora crassa OR74A: Thermostable Enzyme with High Activity Toward Lichenan and beta-Glucan. MOLECULAR BIOTECHNOLOGY, v. 57, n. 6, p. 574-588, . (08/56255-9, 10/08680-2, 09/54035-4, 09/11536-3, 11/20505-4)

TSUCHIDA, JEFFERSON ESQUINA; REZENDE, CAMILA ALVES; DE OLIVEIRA-SILVA, RODRIGO; LIMA, MARISA APARECIDA; D'EURYDICE, MARCEL NOGUEIRA; POLIKARPOV, IGOR; BONAGAMBA, TITO JOSE. Nuclear magnetic resonance investigation of water accessibility in cellulose of pretreated sugarcane bagasse. BIOTECHNOLOGY FOR BIOFUELS, v. 7, . (10/08370-3, 10/11135-6, 08/56255-9, 09/54880-6, 12/22119-7, 09/18354-8)

DE ARAUJO, EVANDRO ARES; TOMAZINI, JR., ATILIO; SEIKI KADOWAKI, MARCO ANTONIO; MURAKAMI, MARIO TYAGO; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 6, p. 676-678, . (09/05349-6, 10/52362-5, 07/08706-9, 08/56255-9)

TOMAZINI JUNIOR, ATILIO; DOLCE, LUCIANO GRACIANI; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Xanthomonas campestris expansin-like X domain is a structurally disordered beta-sheet macromolecule capable of synergistically enhancing enzymatic efficiency of cellulose hydrolysis. Biotechnology Letters, v. 37, n. 12, p. 2419-2426, . (08/56255-9, 07/08706-9, 10/52362-5, 09/05349-6)

LIMA, MARISA A.; OLIVEIRA-NETO, MARIO; KADOWAKI, MARCO ANTONIO S.; ROSSETO, FLAVIO R.; PRATES, ERICA T.; SQUINA, FABIO M.; LEME, ADRIANA F. P.; SKAF, MUNIR S.; POLIKARPOV, IGOR. Aspergillus niger beta-Glucosidase Has a Cellulase-like Tadpole Molecular Shape INSIGHTS INTO GLYCOSIDE HYDROLASE FAMILY 3 (GH3) beta-GLUCOSIDASE STRUCTURE AND FUNCTION. Journal of Biological Chemistry, v. 288, n. 46, p. 32991-33005, . (08/56255-9, 10/16542-9, 09/54035-4)

BLEICHER, LUCAS; PRATES, ERICA T.; GOMES, THIAGO C. F.; SILVEIRA, RODRIGO L.; NASCIMENTO, ALESSANDRO S.; ROJAS, ADRIANA L.; GOLUBEV, ALEXANDER; MARTINEZ, LEANDRO; SKAF, MUNIR S.; POLIKARPOV, IGOR. Molecular Basis of the Thermostability and Thermophilicity of Laminarinases: X-ray Structure of the Hyperthermostable Laminarinase from Rhodothermus marinus and Molecular Dynamics Simulations. Journal of Physical Chemistry B, v. 115, n. 24, p. 7940-7949, . (09/14107-6, 10/08680-2, 10/16947-9, 10/18849-4)

LIBERATO, MARCELO VIZONA; GENEROSO, WESLEY CARDOSO; MALAGO, JR., WILSON; HENRIQUE-SILVA, FLAVIO; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of endoglucanase III from Trichoderma harzianum. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 68, n. 3, p. 306-309, . (09/14333-6, 09/52840-7)

BERNARDES, AMANDA; BATISTA, FERNANDA A. H.; NETO, MARIO DE OLIVEIRA; FIGUEIRA, ANA CAROLINA M.; WEBB, PAUL; SAIDEMBERG, DANIEL; PALMA, MARIO S.; POLIKARPOV, IGOR. Low-Resolution Molecular Models Reveal the Oligomeric State of the PPAR and the Conformational Organization of Its Domains in Solution. PLoS One, v. 7, n. 2, . (08/05637-9, 10/17048-8, 08/00078-1, 06/00182-8)

LIMA, LEONARDO H. F.; SERPA, VIVIANE I.; ROSSETO, FLAVIO R.; SARTORI, GERALDO RODRIGUES; DE OLIVEIRA NETO, MARIO; MARTINEZ, LEANDRO; POLIKARPOV, IGOR. Small-angle X-ray scattering and structural modeling of full-length: cellobiohydrolase I from Trichoderma harzianum. Cellulose, v. 20, n. 4, p. 1573-1585, . (08/05637-9, 08/56255-9, 09/52840-7, 07/08706-9, 10/16947-9)

SANTO, MELISSA ESPIRITO; REZENDE, CAMILA A.; BERNARDINELLI, OIGRES D.; PEREIRA, JR., NEI; CURVELO, ANTONIO A. S.; DEAZEVEDO, EDUARDO R.; GUIMARAES, FRANSCISCO E. G.; POLIKARPOV, IGOR. Structural and compositional changes in sugarcane bagasse subjected to hydrothermal and organosolv pretreatments and their impacts on enzymatic hydrolysis. INDUSTRIAL CROPS AND PRODUCTS, v. 113, p. 64-74, . (15/13684-0, 10/52362-5)

PELLEGRINI, VANESSA O. A.; BERNARDES, AMANDA; REZENDE, CAMILA A.; POLIKARPOV, IGOR. Cellulose fiber size defines efficiency of enzymatic hydrolysis and impacts degree of synergy between endo- and exoglucanases. Cellulose, v. 25, n. 3, p. 1865-1881, . (16/13602-7, 12/22802-9, 10/18773-8, 15/13684-0)

CRUZ, GLAUBER; SANTIAGO, PATRICIA A.; BRAZ, CARLOS E. M.; SELEGHIM, JR., PAULO; CRNKOVIC, PAULA MANOEL. Investigation into the physical-chemical properties of chemically pretreated sugarcane bagasse. JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY, v. 132, n. 2, p. 1039-1053, . (10/20681-4)

DE ARAUJO, EVANDRO ARES; MANZINE, LIVIA REGINA; PIIADOV, VASSILI; SEIKI KADOWAKI, MARCO ANTONIO; POLIKARPOV, IGOR. Biochemical characterization, low-resolution SAXS structure and an enzymatic cleavage pattern of BlCel48 from Bacillus licheniformis. International Journal of Biological Macromolecules, v. 111, p. 302-310, . (10/52362-5, 15/13684-0, 14/00769-5, 11/20505-4)

DOS SANTOS, JADEMILSON CELESTINO; BERNARDES, AMANDA; GIAMPIETRO, LETIZIA; AMMAZZALORSO, ALESSANDRA; DE FILIPPIS, BARBARA; AMOROSO, ROSA; POLIKARPOV, IGOR. Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor alpha/gamma. Journal of Structural Biology, v. 191, n. 3, p. 332-340, . (09/14333-6, 08/56255-9)

AFIONIS, STAVROS; STRINGER, LINDSAY C.; FAVRETTO, NICOLA; TOMEI, JULIA; BUCKERIDGE, MARCOS S.. Unpacking Brazil's Leadership in the Global Biofuels Arena: Brazilian Ethanol Diplomacy in Africa. GLOBAL ENVIRONMENTAL POLITICS, v. 16, n. 3, p. 127-150, . (09/52840-7, 08/57908-6)

LIBERATO, MARCELO V.; SILVEIRA, RODRIGO L.; PRATES, ERICA T.; DE ARAUJO, EVANDRO A.; PELLEGRINI, VANESSA O. A.; CAMILO, CESAR M.; KADOWAKI, MARCO A.; NETO, MARIO DE O.; POPOV, ALEXANDER; SKAF, MUNIR S.; et al. Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism. SCIENTIFIC REPORTS, v. 6, . (13/15582-5, 08/56255-9, 09/52840-7, 14/10448-1, 10/18773-8, 13/08293-7)

SEGATO, FERNANDO; DIAS, BRUNO; BERTO, GABRIELA L.; DE OLIVEIRA, DYONI M.; DE SOUZA, FLAVIO H. M.; CITADINI, ANA PAULA; MURAKAMI, MARIO T.; DAMASIO, ANDRE R. L.; SQUINA, FABIO MARCIO; POLIKARPOV, IGOR. Cloning, heterologous expression and biochemical characterization of a non-specific endoglucanase family 12 from Aspergillus terreus NIH2624. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, v. 1865, n. 4, p. 395-403, . (09/52840-7, 14/18714-2, 13/21545-5)

KADOWAKI, MARCO A. S.; VARNAI, ANIKO; JAMESON, JOHN-KRISTIAN; LEITE, ANA E. T.; COSTA-FILHO, ANTONIO J.; KUMAGAI, PATRICIA S.; PRADE, ROLF A.; POLIKARPOV, IGOR; EIJSINK, VINCENT G. H.. Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila. PLoS One, v. 13, n. 8, . (15/13684-0, 11/20505-4)

DECARLI, M. C.; CORREA, T. Q.; VOLLET-FILHO, J. D.; BAGNATO, V. S.; SOUZA, C. W. O.. The influence of experimental conditions on the final result of photoinhibition of Staphylococcus aureus. Photodiagnosis and Photodynamic Therapy, v. 19, p. 229-234, . (13/07276-1, 09/54035-4)

MELLO, BRUNO L.; ALESSI, ANNA M.; MCQUEEN-MASON, SIMON; BRUCE, NEIL C.; POLIKARPOV, IGOR. Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia. SCIENTIFIC REPORTS, v. 6, . (11/21608-1, 10/52362-5)

GODOY, ANDRE SCHUTZER; CAMILO, CESAR MOISES; KADOWAKI, MARCO ANTONIO; MUNIZ, HELOISA DOS S.; SANTO, MELISSA ESPIRITO; MURAKAMI, MARIO TYAGO; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Crystal structure of beta 1 -> 6-galactosidase from Bifidobacterium bifidum S17: trimeric architecture, molecular determinants of the enzymatic activity and its inhibition by alpha-galactose. FEBS Journal, v. 283, n. 22, p. 4097-4112, . (14/06565-2, 11/05712-3, 08/56255-9, 09/52840-7, 09/05328-9, 11/20505-4)

SONODA, MILTON T.; GODOY, ANDRE S.; PELLEGRINI, VANESSA O. A.; KADOWAKI, MARCO A. S.; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, v. 1863, n. 6, p. 1015-1026, . (17/18173-0, 15/13684-0, 14/06565-2)

VIEIRA, F. R.; PECCHIA, J. A.; SEGATO, F.; POLIKARPOV, I.. Exploring oyster mushroom (Pleurotus ostreatus) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical composition of biomass impacting mushroom yields. Journal of Applied Microbiology, v. 126, n. 3, p. 931-944, . (13/21545-5, 14/18714-2, 15/13684-0, 09/52840-7)

GRANDIS, ADRIANA; LEITE, DEBORA C. C.; TAVARES, EVELINE Q. P.; ARENQUE-MUSA, BRUNA C.; GAIARSA, JONAS W.; MARTINS, MARINA C. M.; DE SOUZA, AMANDA P.; GOMEZ, LEONARDO D.; FABBRI, CLAUDIA; MATTEI, BENEDETTA; et al. Cell wall hydrolases act in concert during aerenchyma development in sugarcane roots. ANNALS OF BOTANY, v. 124, n. 6, SI, p. 1067-1089, . (10/17104-5, 10/17070-3, 09/52840-7, 14/50884-5, 08/57908-6)

VACILOTTO, MILENA MOREIRA; SEPULCHRO, ANA GABRIELA VEIGA; PELLEGRINI, VANESSA O. A.; POLIKARPOV, IGOR. Production of prebiotic xylooligosaccharides from arabino- and glucuronoxylan using a two-domain Jonesia denitrificans xylanase from GH10 family. Enzyme and Microbial Technology, v. 144, . (15/13684-0)

VELASCO, JOSMAN; PELLEGRINI, VANESSA DE OLIVEIRA ARNOLDI; SEPULCHRO, ANA GABRIELA VEIGA; KADOWAKI, MARCO ANTONIO SEIKI; SANTO, MELISSA CRISTINA ESPIRITO; POLIKARPOV, IGOR; SEGATO, FERNANDO. Comparative analysis of two recombinant LPMOs from Aspergillus fumigatus and their effects on sugarcane bagasse saccharification. Enzyme and Microbial Technology, v. 144, . (19/22284-7, 15/13684-0, 14/06923-6, 14/18714-2, 19/01165-0, 17/50025-0)

PUHL, ANA C.; PRATES, ERICA T.; ROSSETO, FLAVIO R.; MANZINE, LIVIA R.; STANKOVIC, IVANA; DE ARAUJO, SIMARA S.; ALVAREZ, THABATA M.; SQUINA, FABIO M.; SKAF, MUNIR S.; POLIKARPOV, IGOR. Crystallographic structure and molecular dynamics simulations of the major endoglucanase from Xanthomonas campestris pv. campestris shed light on its oligosaccharide products release pattern. International Journal of Biological Macromolecules, v. 136, p. 493-502, . (11/20505-4, 15/13684-0, 09/52840-7, 10/52362-5, 11/21608-1, 15/50590-4)

SADRAEIAN, MOHAMMAD; BAHOU, CALISE; DA CRUZ, EDGAR FERREIRA; RAMOS JANINI, LUIZ MARIO; DIAZ, RICARDO SOBHIE; BOYLE, ROSS W.; CHUDASAMA, VIJAY; GONTIJO GUIMARAES, FRANCISCO EDUARDO. Photoimmunotherapy Using Cationic and Anionic Photosensitizer-Antibody Conjugates against HIV Env-Expressing Cells. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 21, n. 23, . (13/07276-1, 17/10910-5, 09/54035-4)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

RAMIA, Marina Paglione. Estudos funcionais e estruturais de uma endoglucanase de Phanerochaete chrysosporium da família 45 das hidrolases de glicosídeos. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (11/19100-0

PELLEGRINI, Vanessa de Oliveira Arnoldi. Clonagem molecular, expressão, purificação e caracterização estrutural da endoglucanase de Trichoderma harzianum visando o desenvolvimento de coquetéis enzimáticos para a produção de etanol lignocelulósico. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (10/18773-8

GODOY, Andre Schutzer de. Estudos estruturais e funcionais das enzimas beta-galactosidases de bactérias. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (11/05712-3

JUNIOR, Mario Sanches Matilde. Resolução estrutural cristalográfica de proteases de HIV-1 de subtipos brasileiros e estudos estruturais da l-asparginase de Escherichia coli. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (00/03674-2

NASCIMENTO, Alessandro Silva. Interações dos receptores nucleares com seus ligantes: Estudos estruturais do receptor de hormônio tireoidiano, do receptor de mineralocorticóide e do receptor ativado por proliferadores peroxissomais. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (04/08070-9

SERPA, Viviane Isabel. Produção e caracterização de proteínas do complexo celulolítico de Trichoderma harzianum e T.reesei, envolvidas na hidrólise enzimática da biomassa. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (07/08706-9

MELLO, Bruno Luan Soares Paula de. Identificação e caracterização da primeira exoxilanase da família 11 de hidrolase de glicosídeo a partir do estudo do metatranscriptoma de um consórcio derivado da compostagem. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (11/21608-1

APARICIO, Ricardo. Estudos estruturais sobre a [Beta]-manosidase de Trichoderma reesei e a Triose fosfato isomerase de músculo de coelho. Tese (Doutorado) -  Instituto de Fisica Gleb Wataghin.  Universidade Estadual de Campinas (UNICAMP).  (98/06761-1

OLIVEIRA, Kesley Moraes Godinho de. Estudos de difração de raios-x a alta resolução da beta-lactoglobulina bovina. Dissertação (Mestrado) -  Instituto de Fisica Gleb Wataghin.  Universidade Estadual de Campinas (UNICAMP).  (97/00248-8

MUNIZ, Amanda Bernardes. Estudos estruturais e funcionais dos receptores ativadores da proliferação de peroxissomos. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (07/58443-4

DIAS, Sandra Martha Gomes. Estudos estruturais dos receptores nucleares humanos para os hormônios tireoidianos Isoforma ß1 (hTRß1) e para o ácido retinóico 9-cis Isoforma a (hRXRa). Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (00/00021-8

FIGUEIRA, Ana Carolina Migliorini. Oligomerização, estruturas à baixa resolução, ligação ao DNA e ao ligante dos receptores de hormônios tireoidianos. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (03/09462-5

NETO, Mario de Oliveira. Espalhamento de raios-X a baixo ângulo aplicado ao estudo estrutural de proteínas. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (02/14041-6

MATOZO, Huita Do Couto. Estudos estruturais do domínio catalítico da proteína tirosina fosfatase eta de rato. Dissertação (Mestrado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (04/12198-0

TRIVELLA, Daniela Barretto Barbosa. Bases moleculares e estruturais do reconhecimento de ligantes pela proteína transtirretina humana. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (06/01708-3

CARDONA, Adriana Lucely Rojas. Estudos estruturais de glicosidases de fungos. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (01/07014-0

SANTOS, Jademilson Celestino dos. Caracterização estrutural dos complexos entre os receptores ativadores da proliferação de peroxissomos (PPARs) dos tipos alfa e gama e seus agonistas. Tese (Doutorado) -  Instituto de Física de São Carlos.  Universidade de São Paulo (USP).  São Carlos.  (09/14333-6

NAGEM, Ronaldo Alves Pinto. Otimização das condições para a aquisição de dados de derivados e para a determinação das fases dos fatores de esttutura de cristais de proteínas por meio da difração da luz síncrotron. Tese (Doutorado) -  Instituto de Fisica Gleb Wataghin.  Universidade Estadual de Campinas (UNICAMP).  (98/06218-6

Patent applications

OLIGONUCLEOTÍDEOS PARA PRODUÇÃO DE ENDOGLUCANASE, SEQUÊNCIAS PARA PRODUÇÃO DE ENDOGLUCANASE, PROCESSO DE OBTENÇÃO DE ENDOGLUCANASE E USOS DA ENDOGLUCANASE BR1020130108090 - Universidade de São Paulo (USP). Igor Polikarpov; Vanessa de Oliveira Arnoldi Pellegrini; Viviane Isabel Serpa - May 2013, 02

SISTEMA DE INJEÇÃO DE GASES PARA RETORES DE AGITAÇÃO PNEUMÁTICA BR1020140186379 - Universidade de São Paulo (USP). Igor Polikarpov; Patrícia Aparecida Santiago Monteiro; Paulo Seleghim Júnior - July 2014, 29

BIOSSENSOR PARA DETECÇÃO DE HORMÔNIOS TIREOIDIANOS E APLICAÇÕES EM NANOMEDICINA PI1101437-7 - Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Universidade de São Paulo (USP). Valtencir Zucolotto; Igor Polikarpov; Luana Bendo; Ana Carolina Migliorini Figueira - April 2011, 04

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