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Ricardo Zorzetto Nicoliello Vêncio

CV Lattes

Universidade de São Paulo (USP). Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

BSc. in Physics, MSc. in Statistics, PhD. in Bioinformatics and Dr Hab. in Probability & Statistics by the University of São Paulo (USP), I have been working on the creation of mathematical and computational methods for the solution of problems in Biology and Medicine. In late 2008 I joined the University of São Paulo's Medical School at Ribeirão Preto (FMRP-USP) as Assistant Professor to conduct research and teaching activities on bioinformatics at the Genetics Department. At that moment I founded the LabPIB (acronym that stands for Biological Information Processing Lab, in Portuguese In late 2010 I was invited to join the newly created Department of Computing and Mathematics (DCM) at University of Sao Paulo's Ribeirao Preto campus, to where I moved the LabPIB. In early 2013 I became Associate Professor in the same department. Questions or reprint requisitions of my published works ( or even random comments are always welcome: (Source: Lattes Curriculum)

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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (11)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

VÊNCIO‚ R.Z.N.; BRENTANI‚ H.; PEREIRA‚ C.A.B.. Using credibility intervals instead of hypothesis tests in SAGE analysis. Bioinformatics, v. 19, n. 18, p. 2461-2464, .

ERNST, MADELEINE; SILVA, DENISE B.; SILVA, RICARDO; MONGE, MARCELO; SEMIR, JOAO; VENCIO, RICARDO Z. N.; LOPES, NORBERTO P.. A metabolomic protocol for plant systematics by matrix-assisted laser-desorption/ionization time-of flight mass spectrometry. Analytica Chimica Acta, v. 859, p. 46-58, . (12/18031-7, 09/54098-6, 10/14926-4, 11/05215-0)

ALMEIDA-E-SILVA, DANILLO C.; VENCIO, RICARDO Z. N.. SIFTER-T: A scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation. BIOTECHNIQUES, v. 58, n. 3, p. 140-142, . (09/53161-6)

SILVA, RICARDO R.; JOURDAN, FABIEN; SALVANHA, DIEGO M.; LETISSE, FABIEN; JAMIN, EMILIEN L.; GUIDETTI-GONZALEZ, SIMONE; LABATE, CARLOS A.; VENCIO, RICARDO Z. N.. ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics. Bioinformatics, v. 30, n. 9, p. 1336-1337, . (09/53161-6)

ERNST, MADELEINE; SILVA, DENISE BRENTAN; SILVA, RICARDO ROBERTO; VENCIO, RICARDO Z. N.; LOPES, NORBERTO PEPORINE. Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing. NATURAL PRODUCT REPORTS, v. 31, n. 6, p. 784-806, . (12/18031-7, 09/54098-6, 10/14926-4, 11/05215-0)

KHAN, ATLAS; QU, YAN-PENG; LI, ZHENG-XUE. Convergence Analysis of a New MaxMin-SOMO Algorithm. INTERNATIONAL JOURNAL OF AUTOMATION AND COMPUTING, v. 16, n. 4, p. 534-542, . (12/23329-5)

VÊNCIO‚ R.; BRENTANI‚ H.; PATRÃO‚ D.; PEREIRA‚ C.. Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE). BMC Bioinformatics, v. 5, n. 1, p. 119, .

JIANG, YUXIANG; ORON, TAL RONNEN; CLARK, WYATT T.; BANKAPUR, ASMA R.; D'ANDREA, DANIEL; LEPORE, ROSALBA; FUNK, CHRISTOPHER S.; KAHANDA, INDIKA; VERSPOOR, KARIN M.; BEN-HUR, ASA; et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology, v. 17, . (09/53161-6)

KHAN, ATLAS; XUE, LI ZHENG; WEI, WU; QU, YANPENG; HUSSAIN, AMIR; VENCIO, RICARDO Z. N.. Convergence Analysis of a New Self Organizing Map Based Optimization (SOMO) Algorithm. COGNITIVE COMPUTATION, v. 7, n. 4, p. 477-486, . (12/23329-5)

BORGES, GISELY T.; VENCIO, ENEIDA F.; QUEK, SUE-ING; CHEN, ADELINE; SALVANHA, DIEGO M.; VENCIO, RICARDO Z. N.; NGUYEN, HOLLY M.; VESSELLA, ROBERT L.; CAVANAUGH, CHRISTOPHER; WARE, CAROL B.; et al. Conversion of Prostate Adenocarcinoma to Small Cell Carcinoma-Like by Reprogramming. Journal of Cellular Physiology, v. 231, n. 9, p. 2040-2047, . (11/08104-4)

BROOKS, AARON N.; REISS, DAVID J.; ALLARD, ANTOINE; WU, WEI-JU; SALVANHA, DIEGO M.; PLAISIER, CHRISTOPHER L.; CHANDRASEKARAN, SRIRAM; PAN, MIN; KAUR, AMARDEEP; BALIGA, NITIN S.. A system-level model for the microbial regulatory genome. MOLECULAR SYSTEMS BIOLOGY, v. 10, n. 7, . (12/05392-1, 11/08104-4)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

SILVA, Ricardo Roberto da. Anotação probabilística de perfis de metabólitos obtidos por cromatografia líquida acoplada a espectrometria de massas. Tese (Doutorado) -  Faculdade de Medicina de Ribeirão Preto.  Universidade de São Paulo (USP).  Ribeirão Preto.  (10/14926-4

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